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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_21299457_21300967_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21299457 - 21300967
Intron Length:
1511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TTCAAATTAACT
Flanking Amino Acid:
FIGENSRTCMIATISPGMAS
Intron Amino Acid Position:
540

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
77.3
0.68
1
81.5
27
Major PPT
89.4
0.89
0.7
85
29.8
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
59.2
0.37
1.9
79.31
42.1

Associated Gene:

Gene:
KIF2A
Ensembl Gene ID:
ENSAPLG00000009519
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009960
21257494 - 21309662
52169
ENSAPLT00000006864
21257555 - 21309662
52108
ENSAPLT00000016175
21257555 - 21309662
52108