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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_21301036_21303776_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21301036 - 21303776
Intron Length:
2741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TATTTTCTGATT
Flanking Amino Acid:
NTLNTLRYANRVKELTVDPS
Intron Amino Acid Position:
562

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
76.6
33.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
79.2
0.66
0.8
74.3
35.1
Minor 5ss
37.7
-1.4
3.1
47.6
48.1
Minor BPS
56.2
0.28
1.6
75.66
35.1

Associated Gene:

Gene:
KIF2A
Ensembl Gene ID:
ENSAPLG00000009519
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016175
21257555 - 21309662
52108