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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_21307907_21309576_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21307907 - 21309576
Intron Length:
1670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTAAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTTTCCTTAAAG
Flanking Amino Acid:
QKIDILTELRDKVKSFRAAL
Intron Amino Acid Position:
730

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
73.2
39.3
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
81.9
0.72
0.9
83
26
Minor 5ss
39.2
-1.2
3.1
52.5
44.7
Minor BPS
83.7
0.92
1.3
85.06
33.6

Associated Gene:

Gene:
KIF2A
Ensembl Gene ID:
ENSAPLG00000009519
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016175
21257555 - 21309662
52108
ENSAPLT00000009960
21257494 - 21309662
52169
ENSAPLT00000006864
21257555 - 21309662
52108