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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_21313791_21314504_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21313791 - 21314504
Intron Length:
714

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAATATT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
ATAACATGAATT
Flanking Amino Acid:
ARSMDIDDFIRLLHGFNSEG
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.8
89.3
23.4
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
89.1
0.88
0.6
87.7
22.4
Minor 5ss
35.6
-1.6
3
50.6
45.9
Minor BPS
51.8
0.14
1.7
70.89
39.3

Associated Gene:

Gene:
DIMT1
Ensembl Gene ID:
ENSAPLG00000009464
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009891
21313748 - 21320820
7073