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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_21314612_21315098_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21314612 - 21315098
Intron Length:
487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTTCC
5'SS Class:
major
3'SS Sequence:
TTTCCATTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTTCCATTGATA
Flanking Amino Acid:
YRIHCSLHNREIPENFKIAE
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
69.5
36.3
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
72.5
0.51
1
69.4
35.8
Minor 5ss
42.7
-0.8
2.7
50.7
39.7
Minor BPS
65.1
0.47
1.6
77.35
32.6

Associated Gene:

Gene:
DIMT1
Ensembl Gene ID:
ENSAPLG00000009464
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009891
21313748 - 21320820
7073