About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_21317264_21318114_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21317264 - 21318114
Intron Length:
851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTACTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATTTTCTCATTT
Flanking Amino Acid:
FKLLLHRPFFRCAILMFQRE
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.4
29.9
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
76.5
0.6
0.9
73.7
35.8
Minor 5ss
42.1
-0.9
2.4
52.1
44.5
Minor BPS
57.9
0.32
1.8
78.15
38.6

Associated Gene:

Gene:
DIMT1
Ensembl Gene ID:
ENSAPLG00000009464
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009891
21313748 - 21320820
7073