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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_21318316_21318429_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
21318316 - 21318429
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTGATGATT
5'SS Class:
major
3'SS Sequence:
ACTCGAAATCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CAAACTCGAAAT
Flanking Amino Acid:
PRLVVSAFEVVGDVLKTELP
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61
0.26
1
66.9
37.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
49.3
-0
1.1
43.4
40.2
Minor 5ss
34.7
-1.7
3.4
50.3
41.4
Minor BPS
42.2
-0.5
1.8
54.17
40.4

Associated Gene:

Gene:
DIMT1
Ensembl Gene ID:
ENSAPLG00000009464
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009891
21313748 - 21320820
7073