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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_21318514_21318890_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21318514 - 21318890
Intron Length:
377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCTTCTTTATTT
Flanking Amino Acid:
TVKMLEKVKKVIACEIDPRL
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
79
35.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
90.5
0.91
0.7
88.8
26.9
Minor 5ss
38
-1.4
3.3
49.5
41.1
Minor BPS
70
0.71
1.5
83.14
39

Associated Gene:

Gene:
DIMT1
Ensembl Gene ID:
ENSAPLG00000009464
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009891
21313748 - 21320820
7073