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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_21329070_21329348_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
21329070 - 21329348
Intron Length:
279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACCAGT
5'SS Class:
major
3'SS Sequence:
TAAATGTTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTTTTTTAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.2
72.7
44.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
69.5
0.44
1
65.7
44.7
Minor 5ss
46.6
-0.3
2.7
67
43.9
Minor BPS
72.6
0.79
1.3
84.29
36.6

Associated Gene:

Gene:
IPO11
Ensembl Gene ID:
ENSAPLG00000009338
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041958
21320692 - 21406341
85650
ENSAPLT00000009795
21320692 - 21413876
93185