Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_21349474_21352535_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21349474 - 21352535

Intron Length:

3062

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTA|GTAAGTATC

5'SS Class:

strong_major

3'SS Sequence:

TCTGATTTACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTGAT

U12 Branch Point Sequence:

TAGTTGTTAAAT

Flanking Amino Acid:

FERLKQFLECSRSIRAENVC

Intron Amino Acid Position:

253

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

0.9

80.8

31.6

Major BPS

82.5

0.81

0.8

71.4

36.6

Major PPT

73.5

0.53

66.3

43.8

Minor 5ss

42.1

-0.9

2.8

56.5

35.6

Minor BPS

53.8

0.2

2.1

73.86

42.8

Associated Gene:

Gene:

IPO11

Ensembl Gene ID:

ENSAPLG00000009338

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009795

21320692 - 21413876

93185

ENSAPLT00000041958

21320692 - 21406341

85650