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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_21352607_21354301_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21352607 - 21354301
Intron Length:
1695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
GCTTAATTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CCTTGCTTAATT
Flanking Amino Acid:
EKTIILFTKVLLDFLDQHPF
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
88.9
24.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
72
0.5
0.9
62.6
43.1
Minor 5ss
39.5
-1.2
2.8
48.3
41.8
Minor BPS
66.9
0.61
1.8
79.08
43.9

Associated Gene:

Gene:
IPO11
Ensembl Gene ID:
ENSAPLG00000009338
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041958
21320692 - 21406341
85650
ENSAPLT00000009795
21320692 - 21413876
93185