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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_21356622_21358065_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21356622 - 21358065
Intron Length:
1444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TTTTCTTTAACT
Flanking Amino Acid:
VLLEMVHSLQGTTNMEDTSA
Intron Amino Acid Position:
437

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
85.8
0.81
0.7
81.6
30.5
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
94.7
1.48
0.6
103.9
16.9

Associated Gene:

Gene:
IPO11
Ensembl Gene ID:
ENSAPLG00000009338
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041958
21320692 - 21406341
85650
ENSAPLT00000009795
21320692 - 21413876
93185