Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_21379774_21384816_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21379774 - 21384816

Intron Length:

5043

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGAGTAC

5'SS Class:

major

3'SS Sequence:

TTTTGTTCTTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TATTGTCTAATT

Flanking Amino Acid:

TTEGQVQALKVVENVLKVNP

Intron Amino Acid Position:

751

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.49

1.1

63.3

37.9

Major BPS

90.4

0.7

90.2

19.3

Major PPT

79.1

0.65

83.6

31.8

Minor 5ss

-1.7

3.6

48.7

47.8

Minor BPS

54.1

0.21

77.53

39.3

Associated Gene:

Gene:

IPO11

Ensembl Gene ID:

ENSAPLG00000009338

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041958

21320692 - 21406341

85650

ENSAPLT00000009795

21320692 - 21413876

93185