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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_216382_217326_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
216382 - 217326
Intron Length:
945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTATGTTTG
5'SS Class:
major
3'SS Sequence:
TTTTGCTCAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTGAT
U12 Branch Point Sequence:
TTTTGCTCAATA
Flanking Amino Acid:
SDRFSASNFGKERFVKLLDQ
Intron Amino Acid Position:
895

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
71.4
41.2
Major BPS
72.4
0.56
1.2
63.1
44.4
Major PPT
74.4
0.55
0.9
70.8
34.8
Minor 5ss
49.5
-0
2.4
58.1
46.5
Minor BPS
64
0.44
2
79.52
37.1

Associated Gene:

Gene:
UNC13B
Ensembl Gene ID:
ENSAPLG00000003655
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003123
161360 - 370186
208827
ENSAPLT00000003753
161360 - 353765
192406
ENSAPLT00000003128
161360 - 370186
208827