About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_2167153_2184342_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2167153 - 2184342
Intron Length:
17190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGATAT
U12 Branch Point Sequence:
TGATATGTAACA
Flanking Amino Acid:
LMMNGNSMGLSVPVSKREDY
Intron Amino Acid Position:
422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
64.1
0.35
1.3
61
45.5
Major PPT
83
0.74
0.7
77
31.7
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
49.4
-0
2.1
65.94
40.2

Associated Gene:

Gene:
KIAA1328
Ensembl Gene ID:
ENSAPLG00000004859
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041066
2098204 - 2218414
120211
ENSAPLT00000034733
2114325 - 2218414
104090
ENSAPLT00000005003
2054220 - 2191930
137711