About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22066465_22067904_F


Intron Information:

Intron Rank:
4

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
22066465 - 22067904

Intron Length:
1440

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTATGTGTA

5'SS Class:
strong_major

3'SS Sequence:
TTTGTTTCTACAG|A

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
ATTGTAT

U12 Branch Point Sequence:
TCTCTTCCAACT

Flanking Amino Acid:
QVSTDIENTERDMREMKNLL

Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
89.4
0.93
0.8
83.2
28.6

Major BPS
62.7
0.32
1.4
63.4
44

Major PPT
89.3
0.88
0.7
84.3
30.8

Minor 5ss
42.4
-0.8
3.1
57.6
47.1

Minor BPS
48.3
-0
1.8
69.82
41.2

Associated Gene:

Gene:
RGS7BP

Ensembl Gene ID:

Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

22025120 - 22068001
42882

22026144 - 22071673
45530