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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22092595_22094111_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22092595 - 22094111
Intron Length:
1517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGTTTG
5'SS Class:
major
3'SS Sequence:
TTGTTTTGTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTGCTGAATT
Flanking Amino Acid:
IRAGCKKCGYPGHLTFECRN
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.3
70.1
43.1
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
84.8
0.78
0.9
84.6
36
Minor 5ss
45.7
-0.5
2.8
62.9
41.8
Minor BPS
68.3
0.65
1.9
88.83
36.2

Associated Gene:

Gene:
SREK1IP1
Ensembl Gene ID:
ENSAPLG00000009287
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009661
22089258 - 22094178
4921