Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22097789_22099384_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22097789 - 22099384

Intron Length:

1596

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATGACT

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTAAAT

U12 Branch Point Sequence:

TTTAAATATACT

Flanking Amino Acid:

CRNFIQLCMEEYYNNTIFHR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

36.1

Major BPS

82.3

0.8

0.9

87.6

25.7

Major PPT

96.8

1.05

0.5

96.1

13.2

Minor 5ss

-1.7

3.2

45.9

Minor BPS

43.9

-0.4

2.3

71.45

44.6

Associated Gene:

Gene:

CWC27

Ensembl Gene ID:

ENSAPLG00000009278

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009655

22097264 - 22102254

4991

ENSAPLT00000009654

22096693 - 22224878

128186