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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22099498_22101569_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22099498 - 22101569
Intron Length:
2072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATAAA
5'SS Class:
major
3'SS Sequence:
TTGTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
ATATAAATATAT
Flanking Amino Acid:
GESIYGAPFKDEFHSRLRFN
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
76.7
33.8
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
88
0.85
0.8
80.8
36.8
Minor 5ss
33.3
-1.9
3
41.9
44.8
Minor BPS
40.1
-0.6
2.1
60.59
41.7

Associated Gene:

Gene:
CWC27
Ensembl Gene ID:
ENSAPLG00000009278
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009655
22097264 - 22102254
4991
ENSAPLT00000009654
22096693 - 22224878
128186