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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22102553_22102731_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22102553 - 22102731
Intron Length:
179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTGTG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAA
U12 Branch Point Sequence:
ATTTTTTTCATA
Flanking Amino Acid:
LSPHKIRSSEVLFNPFDDIV
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
74
36.6
Major BPS
67.6
0.44
1.2
69.9
35.3
Major PPT
84.2
0.77
0.7
80.6
30.8
Minor 5ss
36.9
-1.5
3.2
48.2
47.9
Minor BPS
60
0.31
1.7
72.5
34

Associated Gene:

Gene:
CWC27
Ensembl Gene ID:
ENSAPLG00000009278
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009654
22096693 - 22224878
128186