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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22102836_22104806_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22102836 - 22104806
Intron Length:
1971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAATACA
5'SS Class:
major
3'SS Sequence:
TTCTTTCTTAAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TCTTTCTTAAAG
Flanking Amino Acid:
EDKKPKVKGTKNFNLLSFGE
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
76.8
31.6
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
80.6
0.69
1
82.2
27.1
Minor 5ss
37.1
-1.5
2.8
43.5
37.7
Minor BPS
71.6
0.54
1.5
72.05
40.8

Associated Gene:

Gene:
CWC27
Ensembl Gene ID:
ENSAPLG00000009278
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009654
22096693 - 22224878
128186