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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22104877_22107553_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22104877 - 22107553
Intron Length:
2677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTAAAC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
EEEEVNRVSQSMKGKSKSSH
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
68.1
37
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
90.7
0.92
0.7
88.7
26.8
Minor 5ss
32.8
-2
3.1
43.4
43.8
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
CWC27
Ensembl Gene ID:
ENSAPLG00000009278
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009654
22096693 - 22224878
128186