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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22116752_22188643_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22116752 - 22188643
Intron Length:
71892

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
ATTCTTGTAAAT
Flanking Amino Acid:
AKTEKKTTSRSEELRKEARQ
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.8
1.18
0.7
98.3
5.31
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
89.5
0.89
0.6
84.5
23.1
Minor 5ss
30
-2.3
3.8
44.9
43.2
Minor BPS
49
0.01
2
72.46
38.4

Associated Gene:

Gene:
CWC27
Ensembl Gene ID:
ENSAPLG00000009278
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009654
22096693 - 22224878
128186