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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22188742_22201600_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22188742 - 22201600
Intron Length:
12859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTTGTTTAACC
Flanking Amino Acid:
EQALKPKEKEEEEPAPNSVV
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
84.8
28.2
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
86
0.81
0.8
85.1
28.4
Minor 5ss
40.3
-1.1
3.3
55.3
48.9
Minor BPS
75.7
0.79
1.7
85.93
32.4

Associated Gene:

Gene:
CWC27
Ensembl Gene ID:
ENSAPLG00000009278
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009654
22096693 - 22224878
128186