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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22201711_22204540_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22201711 - 22204540
Intron Length:
2830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTGTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTAATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ACTTCCTTAAAA
Flanking Amino Acid:
PKKGVSREDQTLALLDRFKS
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
87.2
27.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
82.3
0.73
0.9
79.2
37.9
Minor 5ss
38.7
-1.3
3.4
58.4
46.2
Minor BPS
77.2
0.85
1.3
79.26
36.6

Associated Gene:

Gene:
CWC27
Ensembl Gene ID:
ENSAPLG00000009278
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009654
22096693 - 22224878
128186