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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22268190_22273948_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22268190 - 22273948
Intron Length:
5759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TATCCTGAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTCTTTAATA
Flanking Amino Acid:
CDSTPISNTEECKDVNKVAY
Intron Amino Acid Position:
1034

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
60.5
0.24
1
60.1
40.3
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
81.1
0.97
1
82.68
32.7

Associated Gene:

Gene:
ADAMTS6
Ensembl Gene ID:
ENSAPLG00000009190
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036520
22268080 - 22296717
28638
ENSAPLT00000033160
22268080 - 22296644
28565
ENSAPLT00000009584
22268080 - 22415435
147356
ENSAPLT00000038967
22268080 - 22420317
152238