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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22274106_22275364_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22274106 - 22275364
Intron Length:
1259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATAG
5'SS Class:
strong_major
3'SS Sequence:
GTCTTATTGTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTGTTTTACTT
Flanking Amino Acid:
PRWVTGDWGQCSAQCGLGQQ
Intron Amino Acid Position:
982

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
77.7
33.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
69.9
0.45
1
70
40.5
Minor 5ss
37.3
-1.4
3
46.6
48.7
Minor BPS
53.7
0.19
1.7
71.21
40.9

Associated Gene:

Gene:
ADAMTS6
Ensembl Gene ID:
ENSAPLG00000009190
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036520
22268080 - 22296717
28638
ENSAPLT00000033719
22252832 - 22415143
162312
ENSAPLT00000033160
22268080 - 22296644
28565
ENSAPLT00000009584
22268080 - 22415435
147356
ENSAPLT00000038967
22268080 - 22420317
152238