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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22275542_22282505_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22275542 - 22282505
Intron Length:
6964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
AATATTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTATTT
Flanking Amino Acid:
PQWVALDWSECTPKCGPGFK
Intron Amino Acid Position:
923

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
77.7
32
Major BPS
100
1.24
0.5
100
0
Major PPT
81.1
0.7
0.9
77.8
40.5
Minor 5ss
33.3
-1.9
3.2
39.8
40.3
Minor BPS
68.3
0.65
1.8
89.23
35.4

Associated Gene:

Gene:
ADAMTS6
Ensembl Gene ID:
ENSAPLG00000009190
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033719
22252832 - 22415143
162312
ENSAPLT00000033160
22268080 - 22296644
28565
ENSAPLT00000009584
22268080 - 22415435
147356
ENSAPLT00000038967
22268080 - 22420317
152238
ENSAPLT00000036520
22268080 - 22296717
28638