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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22285665_22296621_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22285665 - 22296621
Intron Length:
10957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACAC
5'SS Class:
strong_major
3'SS Sequence:
ATTCCATCCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGGTGTTTAATT
Flanking Amino Acid:
WSECSATCAGGVQKQEVVCK
Intron Amino Acid Position:
811

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
75.1
35.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
62.6
0.28
1
65.3
34.8
Minor 5ss
32.3
-2
3.1
41.7
45
Minor BPS
62.1
0.46
1.8
76
41.5

Associated Gene:

Gene:
ADAMTS6
Ensembl Gene ID:
ENSAPLG00000009190
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009584
22268080 - 22415435
147356
ENSAPLT00000038967
22268080 - 22420317
152238
ENSAPLT00000033719
22252832 - 22415143
162312