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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22290743_22296621_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22290743 - 22296621
Intron Length:
5879

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACAC
5'SS Class:
strong_major
3'SS Sequence:
TTCATGCCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTGTTTATTT
Flanking Amino Acid:
GQNVLPLVLEMNYVFGPIKY
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
75.1
35.1
Major BPS
100
1.24
0.5
100
0
Major PPT
72.9
0.52
0.9
69.6
36.6
Minor 5ss
32.3
-2
3.1
41.7
45
Minor BPS
60.4
0.41
2
83.14
39

Associated Gene:

Gene:
ADAMTS6
Ensembl Gene ID:
ENSAPLG00000009190
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036520
22268080 - 22296717
28638