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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22298766_22303643_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22298766 - 22303643
Intron Length:
4878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTTAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAG
U12 Branch Point Sequence:
TTTTTTTTTAAG
Flanking Amino Acid:
REVAMSKNYIALKSEEDDYY
Intron Amino Acid Position:
710

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
70.5
33.4
Major BPS
72.5
0.56
1.5
71.7
44.6
Major PPT
82.4
0.73
1
87.4
29.7
Minor 5ss
30.9
-2.2
3.3
36.6
41.5
Minor BPS
56.3
0.05
1.8
67.7
39.9

Associated Gene:

Gene:
ADAMTS6
Ensembl Gene ID:
ENSAPLG00000009190
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033719
22252832 - 22415143
162312
ENSAPLT00000009584
22268080 - 22415435
147356
ENSAPLT00000038967
22268080 - 22420317
152238