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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22307783_22308891_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22307783 - 22308891
Intron Length:
1109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTGT
5'SS Class:
major
3'SS Sequence:
TTTTATTGTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
ATTATGTTATTT
Flanking Amino Acid:
KYYNWKPYTGGGVKPCALNC
Intron Amino Acid Position:
597

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
72.3
39.7
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
83.9
0.76
0.9
77.1
41.6
Minor 5ss
38.5
-1.3
3.4
56.5
47.6
Minor BPS
47.2
-0.1
2.2
70.29
41.3

Associated Gene:

Gene:
ADAMTS6
Ensembl Gene ID:
ENSAPLG00000009190
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009584
22268080 - 22415435
147356
ENSAPLT00000038967
22268080 - 22420317
152238
ENSAPLT00000033719
22252832 - 22415143
162312