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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22308995_22318541_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22308995 - 22318541
Intron Length:
9547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTATGATTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATGAT
U12 Branch Point Sequence:
TTTGTCTGTATG
Flanking Amino Acid:
RKRYRSCNTDPCPSEARDFR
Intron Amino Acid Position:
563

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
79.7
28.2
Major BPS
66.9
0.42
1.3
59.7
46.7
Major PPT
70.7
0.47
1
67.1
43.6
Minor 5ss
34.4
-1.8
3.3
44.6
43.6
Minor BPS
47.6
-0.3
1.9
59.17
42.9

Associated Gene:

Gene:
ADAMTS6
Ensembl Gene ID:
ENSAPLG00000009190
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038967
22268080 - 22420317
152238
ENSAPLT00000033719
22252832 - 22415143
162312
ENSAPLT00000009584
22268080 - 22415435
147356