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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22318606_22320848_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22318606 - 22320848
Intron Length:
2243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
AATATTTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
CATACACTAACT
Flanking Amino Acid:
SSSIRHCDSPAPSGGGKYCL
Intron Amino Acid Position:
541

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.4
67.1
44.6
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
79.3
0.66
0.9
70.1
44.8
Minor 5ss
37
-1.5
2.7
41.4
38.2
Minor BPS
50.3
0.09
2
72.44
43.5

Associated Gene:

Gene:
ADAMTS6
Ensembl Gene ID:
ENSAPLG00000009190
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038967
22268080 - 22420317
152238
ENSAPLT00000033719
22252832 - 22415143
162312
ENSAPLT00000009584
22268080 - 22415435
147356