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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22327799_22339479_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22327799 - 22339479
Intron Length:
11681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TTACTCTGATCA
Flanking Amino Acid:
GATSRQCKYGEVCRELWCLS
Intron Amino Acid Position:
457

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
75.5
40.6
Major BPS
79
0.72
1
69
38.9
Major PPT
78.9
0.65
0.7
72.4
32.3
Minor 5ss
34.8
-1.7
3
41.4
44.7
Minor BPS
52
0.06
1.7
66.6
39.3

Associated Gene:

Gene:
ADAMTS6
Ensembl Gene ID:
ENSAPLG00000009190
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038967
22268080 - 22420317
152238
ENSAPLT00000033719
22252832 - 22415143
162312
ENSAPLT00000009584
22268080 - 22415435
147356