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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22339622_22348147_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22339622 - 22348147
Intron Length:
8526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TTATGTTGAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TTATGTTGAACA
Flanking Amino Acid:
CSRDYITSFLDSGRGTCLDN
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
80.7
33.7
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
69.4
0.44
1.1
65.8
44.1
Minor 5ss
38.7
-1.3
2.8
47.9
41.8
Minor BPS
58.6
0.27
1.9
73.02
38.8

Associated Gene:

Gene:
ADAMTS6
Ensembl Gene ID:
ENSAPLG00000009190
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009584
22268080 - 22415435
147356
ENSAPLT00000038967
22268080 - 22420317
152238
ENSAPLT00000033719
22252832 - 22415143
162312