About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22358043_22361532_R


Intron Information:

Intron Rank:
7

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
22358043 - 22361532

Intron Length:
3490

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TCG|GTAAGATTA

5'SS Class:
strong_major

3'SS Sequence:
TCTGTTTATTCAG|G

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TGTTTAT

U12 Branch Point Sequence:
TTCTGTTTATTC

Flanking Amino Acid:
TYKNKPCGTLGLASVAGMCE

Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
84
0.8
0.9
78.2
32.4

Major BPS
81.3
0.78
1.1
71.7
44.6

Major PPT
82.4
0.73
0.9
81
35.7

Minor 5ss
42
-0.9
3.1
57.2
46.9

Minor BPS
50.4
-0
2
65.17
41.7

Associated Gene:

Gene:
ADAMTS6

Ensembl Gene ID:

Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

22268080 - 22420317
152238

22252832 - 22415143
162312