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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22361577_22398291_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22361577 - 22398291
Intron Length:
36715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGGTTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCTCCTTAACA
Flanking Amino Acid:
AHHDNAVLITRYDICTYKNK
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
77.5
33.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.7
0.69
0.8
77
30.3
Minor 5ss
46.4
-0.4
3.1
63.9
47.7
Minor BPS
90.5
1.27
0.9
91.36
30.2

Associated Gene:

Gene:
ADAMTS6
Ensembl Gene ID:
ENSAPLG00000009190
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033719
22252832 - 22415143
162312
ENSAPLT00000038967
22268080 - 22420317
152238