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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22444334_22447212_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22444334 - 22447212
Intron Length:
2879

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGATGG
5'SS Class:
strong_major
3'SS Sequence:
TTTGGTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ATGTTCTAAATC
Flanking Amino Acid:
QLIALHEILENLINTLFTTP
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
68.5
39.2
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
82.6
0.73
0.9
73.5
41.8
Minor 5ss
31.9
-2.1
3
38.5
46.6
Minor BPS
60.5
0.31
1.6
67.71
38.6

Associated Gene:

Gene:
CENPK
Ensembl Gene ID:
ENSAPLG00000009176
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009552
22444175 - 22468008
23834