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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22447267_22453023_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22447267 - 22453023
Intron Length:
5757

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
GTTATCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
GCTTTGTTAATT
Flanking Amino Acid:
KDVTAKKKKIKNSEEPATQL
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
0.9
82.4
29.7
Major BPS
84.4
0.85
1
84
34.5
Major PPT
83.3
0.75
0.9
77.2
36.9
Minor 5ss
38.1
-1.3
3
53
39
Minor BPS
58.8
0.36
2.1
75.64
41.8

Associated Gene:

Gene:
CENPK
Ensembl Gene ID:
ENSAPLG00000009176
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009552
22444175 - 22468008
23834