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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22453487_22453604_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22453487 - 22453604
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATACAG
5'SS Class:
major
3'SS Sequence:
TCATGTTTCAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATTTTTCATGT
Flanking Amino Acid:
RNKKIKEDFHREEQWHDEQK
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
64.4
41.5
Major BPS
100
1.24
0.5
100
0
Major PPT
65.8
0.36
1.1
66.3
38.5
Minor 5ss
31.4
-2.1
3
38.9
46.2
Minor BPS
47
-0.1
2
68.49
42.8

Associated Gene:

Gene:
CENPK
Ensembl Gene ID:
ENSAPLG00000009176
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009552
22444175 - 22468008
23834