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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22453688_22455061_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22453688 - 22455061
Intron Length:
1374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TACTTTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTATTTTTACTT
Flanking Amino Acid:
EVLLTLGKEELWKVKEDLEK
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
88.4
0.86
0.7
83.4
31.3
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
64.3
0.53
1.5
79.64
37.1

Associated Gene:

Gene:
CENPK
Ensembl Gene ID:
ENSAPLG00000009176
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009552
22444175 - 22468008
23834