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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22463173_22465947_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22463173 - 22465947
Intron Length:
2775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTACCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGTTTTTTACCC
Flanking Amino Acid:
CESIWSQMEECQSKITLKRA
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
85
26.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
80.1
0.68
0.9
73.6
40.9
Minor 5ss
41.1
-1
2.5
50.4
46.1
Minor BPS
65.1
0.45
1.6
74.15
36.9

Associated Gene:

Gene:
CENPK
Ensembl Gene ID:
ENSAPLG00000009176
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009552
22444175 - 22468008
23834