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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22469138_22469925_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22469138 - 22469925
Intron Length:
788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTGTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTCCTTTTATT
Flanking Amino Acid:
SEAAQAKKRRVLEFEHVYLE
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
80.8
0.69
0.9
81.4
36.1
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
67.9
0.65
1.6
85.32
34.8

Associated Gene:

Gene:
PPWD1
Ensembl Gene ID:
ENSAPLG00000009096
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041628
22468855 - 22481865
13011
ENSAPLT00000031199
22468855 - 22481754
12900
ENSAPLT00000017216
22468855 - 22494634
25780
ENSAPLT00000009475
22468855 - 22481865
13011