About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22472013_22474607_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22472013 - 22474607
Intron Length:
2595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
TTTCCTTCCATT
Flanking Amino Acid:
NFDMINMLKLGYSPGQCEWV
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
73.2
39.3
Major BPS
65
0.37
1.3
76.1
38
Major PPT
88.1
0.86
0.8
83.9
31.1
Minor 5ss
40.1
-1.1
2.8
44.4
43.5
Minor BPS
52
0.14
2
77.39
39.6

Associated Gene:

Gene:
PPWD1
Ensembl Gene ID:
ENSAPLG00000009096
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031199
22468855 - 22481754
12900
ENSAPLT00000017216
22468855 - 22494634
25780
ENSAPLT00000009475
22468855 - 22481865
13011
ENSAPLT00000041628
22468855 - 22481865
13011