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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22478038_22480495_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22478038 - 22480495
Intron Length:
2458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTATGTATT
5'SS Class:
major
3'SS Sequence:
TACGTGATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAATAT
U12 Branch Point Sequence:
TTTTCTGTTACG
Flanking Amino Acid:
GDIHIKLFPVECPKTVENFC
Intron Amino Acid Position:
510

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
77.2
37.7
Major BPS
59.7
0.24
1.1
55.7
39.9
Major PPT
66.8
0.38
1
62.9
42.7
Minor 5ss
49
-0.1
2.5
65
40.2
Minor BPS
53
-0
2.4
71.11
42.2

Associated Gene:

Gene:
PPWD1
Ensembl Gene ID:
ENSAPLG00000009096
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041628
22468855 - 22481865
13011
ENSAPLT00000031199
22468855 - 22481754
12900
ENSAPLT00000017216
22468855 - 22494634
25780
ENSAPLT00000009475
22468855 - 22481865
13011