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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22480578_22481015_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22480578 - 22481015
Intron Length:
438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTTGT
5'SS Class:
strong_major
3'SS Sequence:
AACTTCTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TAACATTTAACT
Flanking Amino Acid:
NGHIFHRIIKGFMIQTGDPT
Intron Amino Acid Position:
538

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.1
78.8
38.3
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
71.6
0.49
1
65.8
40
Minor 5ss
47.5
-0.2
2.6
67.8
43
Minor BPS
64.3
0.53
1.5
77.03
38.6

Associated Gene:

Gene:
PPWD1
Ensembl Gene ID:
ENSAPLG00000009096
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009475
22468855 - 22481865
13011
ENSAPLT00000041628
22468855 - 22481865
13011
ENSAPLT00000031199
22468855 - 22481754
12900
ENSAPLT00000017216
22468855 - 22494634
25780