Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22481199_22481614_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22481199 - 22481614

Intron Length:

416

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACT|GTAAGTAAT

5'SS Class:

major

3'SS Sequence:

TCCTGTACCTTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACCTAC

U12 Branch Point Sequence:

TCCTCCTGTACC

Flanking Amino Acid:

SQFFITVVPTPWLDNKHSVF

Intron Amino Acid Position:

599

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.6

0.65

1.1

80.4

Major BPS

46.9

-0.1

1.1

42.2

30.2

Major PPT

68.4

0.41

0.8

66.3

34.4

Minor 5ss

40.3

-1.1

2.9

61.3

Minor BPS

57.2

0.21

1.9

67.39

44.2

Associated Gene:

Gene:

PPWD1

Ensembl Gene ID:

ENSAPLG00000009096

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041628

22468855 - 22481865

13011

ENSAPLT00000017216

22468855 - 22494634

25780

ENSAPLT00000009475

22468855 - 22481865

13011