About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22481755_22494621_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22481755 - 22494621
Intron Length:
12867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGCTAA
5'SS Class:
strong_major
3'SS Sequence:
ATATTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAC
U12 Branch Point Sequence:
TTTCCCATATTC
Flanking Amino Acid:
EDISIINITVKHNT*
Intron Amino Acid Position:
675

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
73.9
32.9
Major BPS
74.7
0.62
1.1
65.7
41
Major PPT
83.3
0.75
0.8
77.7
35.7
Minor 5ss
44.9
-0.5
2.8
55.6
43.2
Minor BPS
56.1
0.17
1.9
73.03
37.8

Associated Gene:

Gene:
PPWD1
Ensembl Gene ID:
ENSAPLG00000009096
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017216
22468855 - 22494634
25780