Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22493133_22493811_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

22493133 - 22493811

Intron Length:

679

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTATGCTAT

5'SS Class:

weak_major

3'SS Sequence:

TTGTAAACTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAA

U12 Branch Point Sequence:

CTTTTGTAAACT

Flanking Amino Acid:

DGVGMAHTEHVPGTAENARS

Intron Amino Acid Position:

285

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.2

0.5

1.1

69.6

37.2

Major BPS

75.2

0.63

1.1

75.9

36.3

Major PPT

67.4

0.39

60.8

40.1

Minor 5ss

64.1

0.48

2.4

77.1

38.5

Minor BPS

52.8

0.16

2.4

78.66

44.1

Associated Gene:

Gene:

TRIM23

Ensembl Gene ID:

ENSAPLG00000009065

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009453

22488180 - 22504953

16774